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Publication Date2024-05
Causal dynamics of sleep, circadian rhythm, and mood symptoms in patients with major depression and bipolar disorder: insights from longitudinal wearable device data
Yun Min Song; Jeong, Jaegwon; Aurelio A. de los Reyes, et al
EBioMedicine, v.103
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Publication Date2024-03
A robust ultrasensitive transcriptional switch in noisy cellular environments
Eui Min Jeong; Jae Kyoung Kim
npj Systems Biology and Applications, v.10, no.1
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Publication Date2024-03
Beyond microtubules: The cellular environment at the endoplasmic reticulum attracts proteins to the nucleus, enabling nuclear transport
Seok Joo Chae; Kim, Dae Wook; Igoshin, Oleg A., et al
iScience, v.27, no.3
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Publication Date2024-02
Density physics-informed neural networks reveal sources of cell heterogeneity in signal transduction
Hyeontae Jo; Hyukpyo Hong; Hwang, Hyung Ju, et al
Patterns, v.5, no.2
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Publication Date2024-02
Circadian regulation of sinoatrial nodal cell pacemaking function: Dissecting the roles of autonomic control, body temperature, and local circadian rhythmicity
Pan Li; Jae Kyoung Kim
PLoS Computational Biology, v.20, no.2
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Publication Date2024-02
Optimal strategies of oncolytic virus-bortezomib therapy via the apoptotic, necroptotic, and oncolysis signaling network
Lee, Donggu; Aurelio A. de los Reyes V; Kim, Yangjin
Mathematical Biosciences and Engineering, v.21, no.3, pp.3876 - 3909
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Publication Date2024-02
Noisy Delay Denoises Biochemical Oscillators
Yun Min Song; Campbell, Sean; Shiau, Liejune, et al
Physical Review Letters, v.132, no.7
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Publication Date2023-11
Inferring delays in partially observed gene regulation processes
Hyukpyo Hong; Cortez, Mark Jayson; Cheng, Yu-Yu, et al
BIOINFORMATICS, v.39, no.11
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Publication Date2023-10
Imputing missing sleep data from wearables with neural networks in real-world settings
Lee, Minki P.; Hoang, Kien; Park, Sungkyu, et al
SLEEP, v.47, no.1
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Publication Date2023-09
Predicting the Risk of Sleep Disorders Using a Machine Learning-Based Simple Questionnaire: Development and Validation Study
Seokmin Ha; Choi, Su Jung; Lee, Sujin, et al
Journal of medical Internet research, v.25, no.1, pp.e46520
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Publication Date2023-09
A real-time, personalized sleep intervention using mathematical modeling and wearable devices
Yun Min Song; Choi, Su Jung; Se Ho Park, et al
SLEEP, v.46, no.9
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Publication Date2023-09
A model-based strategy for the COVID-19 vaccine roll-out in the Philippines
Escosio, Rey Audie S.; Cawiding, Olive R.; Bryan S. Hernandez, et al
Journal of Theoretical Biology, v.573
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Publication Date2023-07
Quantitative Assessment of a Dual Epidemic Caused by Tuberculosis and HIV in the Philippines
Torres, Monica; Tubay, Jerrold; Aurelio de los Reyes V
BULLETIN OF MATHEMATICAL BIOLOGY, v.85, no.7
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Publication Date2023-07
A general model-based causal inference method overcomes the curse of synchrony and indirect effect
Se Ho Park; Seokmin Ha; Jae Kyoung Kim
Nature Communications, v.14, no.1
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Publication Date2023-05
Beyond the Michaelis–Menten: Accurate Prediction of Drug Interactions through Cytochrome P450 3A4 Induction
Vu, N.-A.T.; Yun Min Song; Tran, Q.T., et al
Clinical Pharmacology and Therapeutics, v.113, no.5, pp.1048 - 1057
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Publication Date2023-05
Computational Translation Framework Identifies Biochemical Reaction Networks with Special Topologies and Their Long-Term Dynamics
Hyukpyo Hong; Bryan S. Hernandez; Kim, Jinsu, et al
SIAM JOURNAL ON APPLIED MATHEMATICS, v.83, no.3, pp.1025 - 1048
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Publication Date2023-04
A framework for deriving analytic steady states of biochemical reaction networks
Bryan S. Hernandez; Lubenia, Patrick Vincent N; Johnston, Matthew D., et al
PLoS computational biology, v.19, no.4, pp.e1011039
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Publication Date2023-04
Transmission dynamics and baseline epidemiological parameter estimates of Coronavirus disease 2019 pre-vaccination: Davao City, Philippines
Añonuevo, Loreniel E.; Lachica, Zython Paul T; Amistas, Deza A., et al
PloS one, v.18, no.4, pp.e0283068
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Publication Date2023-04
Spatially coordinated collective phosphorylation filters spatiotemporal noises for precise circadian timekeeping
Seok Joo Chae; Kim, Dae Wook; Seunggyu Lee, et al
iScience, v.26, no.4
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Publication Date2023-04
Toward an optimal contraception dosing strategy
Gavina, B.L.A.; Aurelio A. de los Reyes V; Olufsen, M.S., et al
PLoS computational biology, v.19, no.4, pp.e1010073